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[96] Hehai Jiang*, Logan A Walker*, Ye Li*, Bin Duan, Xiaoman Niu, Jung-Chien Hsieh, Mou-Chi Cheng, Hanquan Su, Kuanwei Sheng, Jessica P Tang, Kenneth Athukorala, Stacey Greene, Ruby Pan, Arya Parlapalli, Peng Yin, Meng Cui^#, Dawen Cai^#
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[95] Nic Fishman*, Gokul Gowri*, Peng Yin, Jonathan Gootenberg†, Omar Abudayyeh†
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[94] Gokul Gowri, Peng Yin, Allon M Klein
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[93] Johannes Stein*, Maria Ericsson, Michel Nofal, Lorenzo Magni, Sarah Aufmkolk, Ryan B McMillan, Laura Breimann, Conor P Herlihy, S Dean Lee, Andréa Willemin, Jens Wohlmann, Laura Arguedas-Jimenez, Peng Yin, Ana Pombo, George M Church*, Chao-ting Wu*
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[92] Shen T*, Hu Z*, Sun S*, Liu D*, Wong F, Wang J, Chen J, Wang Y, Hong L, Xiao J, Zheng L, Krishnamoorthi T, King I, Wang S*, Yin P*, Collins JJ*, Li Y*
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[91] Wang S, Shin TW, Yoder HB 2nd, McMillan RB, Su H, Liu Y, Zhang C, Leung KS, Yin P, Kiessling LL*, Boyden ES*
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[90] Wang Y*, Liu X, Zeng Y, Saka SK, Xie W, Goldaracena I, Kohman RE, Yin P, Church GM*
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[89] Lun XK, Sheng K, Yu X, Lam CY, Gowri G, Serrata M, Zhai Y, Su H, Luan J, Kim Y, Ingber DE, Jackson HW, Yaffe MB, Yin P*
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[88] Yan Z, Eshed A, Tang AA, Arevalos NR, Ticktin ZM, Chaudhary S, Ma D, McCutcheon G, Li Y, Wu K, Saha S, Alcantar-Fernandez J, Moreno-Camacho JL, Campos-Romero A, Collins JJ, Yin P, Green AA*
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[86] Woo S, Saka SK, Xuan F, Yin P
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[85] Stein J*, Ericsson M, Nofal M, Magni L, Aufmkolk S, McMillan RB, Breimann L, Herlihy CP, Lee SD, Willemin A, Wohlmann J, Arguedas-Jimenez L, Yin P, Pombo A, Church GM*, Wu CK*
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[84] F. Hong, J. Y. Kishi, R. N. Delgado, J. Jeong, S. K. Saka, H. Su, C. L. Cepko & P. Yin*
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[83] C. M. Wintersinger, D. Minev, A. Ershova, H. M. Sasaki, G. Gowri, J. F. Berengut, F. E. Corea-Dilbert, P. Yin, W. M. Shih
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[82] J. Y. Kishi^†*, N. Liu^†, E. R. West^†, K. Sheng, J. J. Jordanides, M. Serrata, C. L. Cepko*, S. K. Saka* & P. Yin*
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[81] I. M. Schaefer, M. L. Hemming, M. Z. Lundberg, M. P. Serrata, I. Goldaracena, N. Liu, P. Yin, J. A. Paulo, S. P. Gygi, S. George, J. A. Morgan, M. M. Bertagnolli, E. T. Sicinska, C. Chu, S. Zheng, A. Mariño-Enríquez, J. L. Hornick, C.P. Raut, W. B. Ou, G. D. Demetri, S. K. Saka, J. A. Fletcher
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[80] Hiroshi M. Sasaki, Jocelyn Y. Kishi, Chao-ting Wu, Brian J. Beliveau*, Peng Yin*
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[79] D. Liu^†, F. A. Thélot^†, J. A. Piccirilli, M. Liao* & P. Yin*
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[78] J. A. Alfaro*^†, P. Bohländer^†, M. Dai^†, M. Filius^†, C. J. Howard^†, X. F. van Kooten^†, S. Ohayon^†, A. Pomorski^†, S. Schmid^†, A. Aksimentiev, E. V. Anslyn, G. Bedran, C. Cao, M. Chinappi, E. Coyaud, C. Dekker, G. Dittmar, N. Drachman, R. Eelkema, D. Goodlett, S. Hentz, U. Kalathiya, N. L. Kelleher, R. T. Kelly, Z. Kelman, S. Hyun Kim, B. Kuster, D. Rodriguez-Larrea, S. Lindsay, G. Maglia, E. M. Marcotte, J. P. Marino, C. Masselon, M. Mayer, P. Samaras, K. Sarthak, L. Sepiashvili, D. Stein, M. Wanunu, M. Wilhelm, P. Yin, A. Meller* & C. Joo*
The emerging landscape of single-molecule protein sequencing technologies
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[77] J. Shen, W. Sun, D. Liu, T. Schaus and P. Yin*
Three-dimensional nanolithography guided by DNA modular epitaxy
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[76] L. R. Robinson-Mccarrthy, A. J. Mijalis, G. T. Filsinger, H. de Puig, N. M. Donghia, T. E. Schaus, R. A. Rasmussen, L. Raphael, J. E. Lunshof, G. Chao, D. Ter-Ovanesyan, O. Dodd, E. Kuru, A. M. Sesay, J. Rainbow, A. C. Pawlowski, T. M. Wannier, P. Yin, J. J. Collins, D. E. Ingber, G. M. Church & J. M. Tam
Anomalous COVID-19 tests hinder researchers
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[75] S. F. J. Wickham, A. Auer, J. Min, N. Ponnuswamy, J. B. Woehrstein, F. Schueder, M. T. Strauss, J. Schnitzbauer, B. Nathwani, Z. Zhao, S. D. Perrault, J. Hahn, S. Lee, M. M. Bastings, S. W. Helmig, A. L. Kodal, P. Yin, R. Jungmann* & W. M. Shih*
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[75] Kim Y, Yaseen AB, Kishi JY, Hong F, Saka SK, Sheng K, Gopalkrishnan N, Schaus TE*, Yin P*
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[74] F. Schueder, J. Lara-Gutierrez, D. Haas, K. S. Beckwith, P. Yin, J. Ellenberg and R. Jungmann*
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[73] N. Gopalkrishnan, S. Punthambaker, T. E. Schaus, G. M. Church and P. Yin*
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[72] W. Sun*^†, J. Shen^†, Z. Zhao^†, N. Arellano, C. Rettner, J. Tang, T. Cao, Z. Zhou, T. Ta, J. K. Streit, J. A. Fagan, T. Schaus, M. Zheng, S. Han, W. M. Shih, H. T. Maune and P. Yin*
Precise pitch-scaling of carbon nanotube arrays within three-dimensional DNA nanotrenches
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[71] F. Xu, D. Ma, K. P. MacPherson, S. Liu, Y. Bu, Y. Wang, Y. Tang, C. Bi, T. Kwok, A. A. Chubykin, P. Yin, S. Calve, G. E. Landreth and F. Huang
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[70] F. Zhou, W. Sun, C. Zhang, J. Shen, P. Yin* and H. Liu*
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[69] S. An, K. F. Ziegler, P. Zhang, Y. Wang, T. Kwok, F. Xu, C. Bi, S. Matosevic, P. Yin, T. Li, and F. Huang
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[68] D. Minev^†, R. Guerra^†, J. Y. Kishi^‡, C. Smith^‡, E. Krieg, K. Said, A. Hornick, H. M Sasaki, G. Filsinger, B. J. Beliveau, P. Yin, G. M. Church, W. M. Shih
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[67] J. Kim^†, Y. Zhou^†, P. D. Carlson, M. Teichmann, S. Chaudhary, F. C. Simmel, P. A. Silver, J. J. Collins, J. B. Lucks, P. Yin* & A. A. Green*
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• See media coverage: Wyss Press Release, ASU Press Release, Phys.org, Technology Networks, ScienceDaily

[66] Y. Kim & P. Yin
Enhancing biocompatible stability of DNA nanostructures using dendritic oligonucleotides and brick motifs
Angewandte Chemie, Accepted Articles, First published: 09 October 2019
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[65] HuBMAP Consortium
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Nature, volume 574, pages 187-192 (2019) DOI: 10.1038/s41586-019-1629-x [PDF]

[64] P. Anikeeva, E. Boyden, [...], P Yin, [...], X. Zhuang
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[63] Ninning Liu^†, Mingjie Dai^†,*, Sinem K. Saka & Peng Yin*
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• Highlighted in Nature Research Highlights.
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[62] S. K. Saka^†,*, Y. Wang^†,*, J. Y. Kishi, A. Zhu, Y. Zeng, W. Xie, K. Kirli, C. Yapp, M. Cicconet, B. J. Beliveau, S. W. Lapan, S. Yin, M. Lin, E. S. Boyden, P. S. Kaeser, G. Pihan, G. M. Church, and P. Yin*
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• See media coverage: Wyss Press Release, Phys.org, ScienceDaily, Biocompare, Science Codex
• See video:

  Lighting up proteins with Immuno-SABER

[61] P. Kosuri, B. D. Altheimer, M. Dai, P. Yin, X. Zhuang*
Rotation tracking of genome-processing enzymes using DNA origami rotors
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• See media coverage: Harvard Press Release

[60] M. Jin^†, N. Garreau de Loubresse^†, Y. Kim, J. Kim*, P. Yin*
Programmable CRISPR-Cas repression, activation, and computation with sequence-independent targets and triggers
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[59] J. Y. Kishi^†, S. W. Lapan^†, B. J. Beliveau^†*, E. R. West^†, A. Zhu, H. M. Sasaki, S. K. Saka, Y. Wang, C. L. Cepko*, P. Yin*
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues
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• See media coverage: Wyss Press Release, Technology Networks, Phys.org, Nanowerk, ScienceDaily, 7thSpace
• See video:

  SABER-FISH: Enabling the sensitive and multiplexed detection of nucleic acids within thick tissues

[58] D. Woods^†,*, D. Doty^†,*, C. Myhrvold, J. Hui, F. Zhou, P. Yin, and E. Winfree*
Diverse and robust molecular algorithms using reprogrammable DNA self-assembly
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[57] O.K. Wade^†, J.B. Woehrstein^†, P. C. Nockels^†, S. Strauss^†, F. Stehr, J. Stein, F. Schueder, M.T. Strauss, M. Ganji, J. Schnitzbauer, H. Grabmayr, P. Yin, P. Schwille, R. Jungmann*
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[56] G. Nir^†, I. Farabella^†, C. Perez Estrada^†, C.G. Ebeling^†, B.J. Beliveau, H.M. Sasaki, S.H. Lee, S. Nguyen, R.B. McCole, S. Chattoraj, J. Erceg, J. AlHaj Abed, N.C. Martins, H.Q. Nguyen, M.A. Hannan, S. Russell, N.C. Durand, S.P. Rao, J.Y. Kishi, P. Soler-Vila, M. Di Pierro, J.N. Onuchic, S. Callahan, J. Schreiner, J. Stuckey*, P. Yin*, E. Lieberman Aiden*, M.A. Marti-Renom*, C.T. Wu*
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• See media coverage: Wyss Press Release

[55] X. Qi, F. Zhang, Z. Su, S. Jiang, D. Han, B. Ding, Y. Liu, W. Chiu, P. Yin, H. Yan
Programming molecular topologies from single-stranded nucleic acids
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[54] W. Xu, P. Yin*, M. Dai*
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[53] T. Lin, J. Yan, L. L. Ong, J. Robaszewski, H. D. Lu, Y. Mi, P. Yin*, and B. Wei*
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[52] K. Ye*, D. L. Kaplan, G. Bao, C. Bettinger, G. Forgacs, C. Dong, A. Khademhosseini, Y. Ke , K. Leong, A. Sambanis, W. Sun, and P. Yin
Advanced Cell and Tissue Biomanufacturing
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[51] G. Sachdeva, C. Myhrvold, P. Yin and P. A. Silver
Synthetic RNA scaffolds for spatial engineering in cells
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[50] B. J. Beliveau*, J. Y. Kishi, G. Nir, H. M. Sasaki, S. K. Saka, S. C. Nguyen, C.-t. Wu, and P. Yin*
OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes
Proc Natl Acad Sci USA, March 6, 2018. 115 (10) E2183-E2192
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[49] J. Kim, P. Yin*, and A. A. Green*
Ribocomputing: Cellular Logic Computation Using RNA Devices
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[48] D. Han^†, X. Qi^†, C. Myhrvold, B. Wang, M. Dai, S. Jiang, M. Bates, Y. Liu, B. An^*, F. Zhang^*, H. Yan^* and P. Yin^*
Single-stranded DNA and RNA origami
Science Vol. 358, Issue 6369, eaao2648 (2017) DOI: 10.1126/science.aao2648 [PDF] [Supplementary Materials] [Supplementary Movies]

• Highlighted in MRS Bulletin.
• See media coverage: Wyss Press Release, Harvard Gazette, Phys.Org, ScienceDaily, Scicasts, Nanowerk, ScienceNewsline, AZoNano, Technology Networks, IEEE GlobalSpec
• See video:

  Illustration of single-stranded origami

[47] L. L. Ong, N. Hanikel, O. K. Yaghi, C. Grun, M. T. Strauss, P. Bron, J. Lai-Kee-Him, F. Schueder, B. Wang, P. Wang, J. Y. Kishi, C.A. Myhrvold, A. Zhu, R. Jungmann, G. Bellot^*, Y. Ke^*, and P. Yin^*
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• Highlighted in Nature News and Views [PDF], Nature Reviews Materials [PDF], Science News, Science Podcast.
• See media coverage: Wyss Press Release, HMS News, C&EN, CHEMISTRY WORLD, The Scientist, Phys.Org, Phys.Org 2, ScienceDaily, Nanowerk, nanotechweb, ZME Science, Medical Design Technology, Controlled Environments, Innovations Report, FutureTimeline, Infosurhoy, Sciworthy, welt der physik, Wissenschaft aktuell, DNASpeaking, hsmap.com
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  Illustration of a self-assembled structure with a teddy bear shape cavity

[46] F. Schueder, J. Lara-Guiterrez, B. Beliveau, S. Saka, H. Sasaki, J. Woehrstein, M. Strauss, H. Grabmayr, P. Yin^*, and R. Jungmann^*
Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT
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• See media coverage: Wyss Press Release, ScienceDaily, GEN, Phys.Org, ebiotrade.com

[45] J. Kishi, T. Schaus, N. Gopalkrishnan, F. Xuan, and P. Yin
Programmable autonomous synthesis of single-stranded DNA
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• See media coverage: Wyss Press Release, HMS News, Nanowerk News, ScienceDaily, Phys.org , Technology Networks, eBiotrade.com
• See video:

  Primer Exchange Reactions

[44] T. E. Schaus, S. Woo, F. Xuan, X. Chen and P. Yin
A DNA nanoscope via auto-cycling proximity recording
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• See media coverage: Wyss Press Release, Nanowerk News, AZoNano, BioTecNika, Phys.Org, Gears Of Biz, R & D Magazine, HiTechDays, ScienceDaily, eBiotrade.com
• See an animation video:

  Auto-cycling Proximity Recording

[43] B. J. Beliveau, A. N. Boettiger, G. Nir, B. Bintu, P. Yin^*, X. Zhuang^*, C.-t Wu^*
In situ super-resolution imaging of genomic DNA with OligoSTORM and OligoDNA-PAINT
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[42] J. L. Werbin, M. S. Avendano, V. Becker, R. Jungmann, P. Yin^*, G. Danuser^* and P. K. Sorger^*
Multiplexed Exchange-PAINT imaging reveals ligand-dependent EGFR and Met interactions in the plasma membrane
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[41] A. A. Green^†, J. Kim^†, D. Ma, P. A. Silver, J. J. Collins and P. Yin
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• See media coverage: Wyss Press Release, ASU Press Release, IEEE Spectrum, Kurzweil Accelerating Intelligence, Tonic, DigitalJournal.com, MOTHERBOARD, Technology Networks, ScienceDaily 1, ScienceDaily 2, Scientific Computing, Nanotechnology Now, New big future, Phys.org, Biocompare, Nanowerk 1, Nanowerk 2, Newswise, R&D Magazine, Controlled Environments, Spektrum.de, Le Scienze
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[40] J. B. Woehrstein, M. T. Strauss, L. L. Ong, B. Wei, D. Y. Zhang, R. Jungmann^* and P. Yin^*
Sub-100-nm metafluorophores with digitally tunable optical properties self-assembled from DNA
Science Advances Vol. 3, no. 6, e1602128, doi: 10.1126/sciadv.1602128, PMID: 28691083 [PDF] [Supplementary Materials]

• See media coverage: Wyss Press Release, MPI Press Release, Phys.org, nanotechweb.org, Nanowerk, Controlled Environments, Informationsdienst Wissenschaft, JuraForum, innovations report, NeoDoc, MEDIZIN ASPEKTE, scinexx

[39] Y. Wang, J. B. Woehrstein, N. Donoghue, M. Dai, M. S. Avendano, R. C.J. Schackmann, J. Zoeller, S. S. H. Wang, P. W. Tillberg, D. Park, S. W. Lapan, E. S. Boyden, J. S. Brugge, P. S. Kaeser, G. M. Church, S. S. Agasti^*, R. Jungmann^*, P. Yin^*
Rapid sequential in situ multiplexing with DNA-Exchange-Imaging in Neuronal Cells and Tissues
Nano Letters Article ASAP, DOI: 10.1021/acs.nanolett.7b02716, PMID: 28933153 [PDF] [bioRxiv] [Supplementary Materials] [Supplementary Movie] [Supplementary Movie Caption]

• See a data video:

[38] F. Schueder, M. T. Strauss, D. Hoerl, J. Schnitzbauer, T. Schlichthaerle, S. Strauss, P. Yin, H. Harz, H. Leonhardt and R. Jungmann
Universal super-resolution multiplexing by DNA exchange
Angewandte Chemie 2017, Early View, doi: 10.1002/anie.201611729, PMID: 28256790 [PDF] [Supplementary Materials] [Supplementary Movie]

[37] S. S. Agasti, Y. Wang, F. Schueder, A. Sukumar, R. Jungmann^* and P. Yin^*
DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging
Chem. Sci. 2017, Advance Article, doi: 10.1039/c6sc05420j, PMID: 28451377 [PDF] [Supplementary Materials]

[36] C. Myhrvold, M. Baym, N. Hanikel, L. L. Ong, J. S. Gootenberg and P. Yin
Barcode extension for analysis and reconstruction of structures
Nature Communications 8, Article number: 14698 (2017) doi: 10.1038/ncomms14698, PMID: 28287117 [PDF] [Supplementary Materials] [Supplementary Data]

[35] P. Zhan, P. K. Dutta, P. Wang, G. Song, M. Dai, S-X Zhao, Z-G Wang, P. Yin, W. Zhang, B. Ding, and Y. Ke
Reconfigurable three-dimensional gold nanorod plasmonic nanostructures organized on DNA origami tripod
ACS Nano 2017, 11 (2), pp 1172-1179 [PDF] [Supplementary Materials]

[34] C. Tian, H. Kim, W. Sun, Y. Kim, P. Yin, and H. Liu
DNA nanostructures-mediated molecular imprinting lithography
ACS Nano 2017, 11 (1), pp 227-238. [PDF] [Supplementary Materials]

[33] M. Dai, R. Jungmann and P. Yin
Optical imaging of individual biomolecules in densely packed clusters
Nature Nanotechnology, 11, 798-807 (2016), doi: 10.1038/nnano.2016.95, PMID: 27376244 [PDF]
[Supplementary Information: S1, Supplementary Table: S2]

• Highlighted in Nature Review Materials [PDF], Nature Nanotechnology News and Views [PDF]
  
• See media coverage: Wyss Press Release, Harvard Gazette, NIH NIBIB, Phys.org, Laboratory Network, Science Newsline, ScienceDaily, GeekJournal, Controlled Environments, BestTheNews, AZoNano, American Laboratory, Nanowerk, Photonics Online, Science Codex, Nanotechnology Now, Next Big Future, ChemEurope.com, Microscopy and Analysis.
• See videos:

  Discrete Molecular Imaging	Super Resolution DMI

[32] R. Jungmann^†, M. S. Avendano^†, M. Dai, J. B. Woehrstein, S. S. Agasti, Z. Feiger, A. Rodal and P. Yin
Quantitative super-resolution imaging with qPAINT
Nature Methods, 13, 439-442 (2016), doi: 10.1038/nmeth.3804, PMID: 27018580 [PDF]
[Supplementary Materials: S1, Supplementary Videos: V1, V2]

• See media coverage: Wyss Press Release, Nanowerk, Phys.org, ScienceNewline, Weekly Hot News, Mountain Dreams News, ScienceDaily, NIH NIBIB, ScienceDaily 2, News Medical

[31] J. Elbaz, P. Yin, and C. Voigt
Genetic encoding of DNA nanostructures and their self-assembly in living bacteria
Nature Communications, 7, Article number: 11179 doi: 10.1038/ncomms11179, PMID: 27091073 [PDF] [Supplementary Materials]

[30] F. Zhou, W. Sun, K. B. Ricardo, D. Wang, J. Shen, P. Yin, and H. Liu
Programmably-shaped carbon nanostructure from shape-conserving carbonization of DNA
ACS Nano, 2016, 10 (3), pp 3069-3077, DOI: 10.1021/acsnano.5b05159. [PDF] [Supplementary Materials]

[29] J. B. Knudsen, L. Liu, A. L. B. Kodal, M. Madsen, Q. Li, J. Song, J. B. Woehrstein, S. F. Wickham, M. T. Strauss, F. Schueder, J. Vinther, A. Krissanaprasit, D. Gudnason, A. A. A. Smith, R. Ogaki, A. N. Zelikin, F. Besenbacher, V. Birkedal, P. Yin, W. M. Shih, R. Jungmann, M. Dong and K. V. Gothelf
Routing of individual polymers in designed patterns
Nature Nanotechnology 10, 892-898 (2015). [PDF] [Supplementary Materials]

[28] M. B. Scheible, L. L. Ong, J. B. Woehrstein, R. Jungmann, P. Yin and F. C. Simmel
A compact DNA cube with side length 10 nm
Small 11: 5200-5205 (2015). [PDF] [Supplementary Materials]

[27] C. Grun, J. Werfel, D. Y. Zhang, and P. Yin
DyNAMiC Workbench: an integrated development environment for dynamic DNA nanotechnology
J. R. Soc. Interface 12: 20150580 (2015). [PDF] [Supplementary Materials]

[26] B. J. Beliveau, A. N. Boettiger, M. S. Avendano, R. Jungmann, R. B. McCole, E. F. Joyce, C. Kim-Kiselak, F. Bantignies, C. Y. Fonseka, J. Erceg, M. A. Hannan, H. G. Hoang, D. Colognori, J. T. Lee, W. M. Shih, P. Yin, X. Zhuang & C. Wu
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
Nature Communications 6, 7147 (2015). [PDF] [Supplementary Materials]

[25] B. Wei, M. K. Vhudzijena, J. Robaszewski, P. Yin
Self-assembly of complex two-dimensional shapes from single-stranded DNA tiles
J. Vis. Exp. 99, e52486, doi: 10.3791/52486, PMID: 25993048 (2015). [link] [Materials List]

[24] W. Sun, E. Boulais, Y. Hakobyan, W. Wang, A. Guan, M. Bathe^*, P. Yin^*
Casting inorganic structures with DNA molds
Science 346:1258361 (2014). [PDF] [Supplementary Materials]

• See media coverage: Wyss News Release, Phys.org, The Science Times, Nanotechnology Now, Nanowerk, ars technica, AZO Materials

[23] K. Pardee, A.A. Green, T. Ferrante, E. Cameron, A. DaleyKeyser, P. Yin, and J.J. Collins
Paper-based synthetic gene networks
Cell159:940-954 (2014). [PDF], [Supplementary Materials: S1, Supplementary Data: S1, S2]

[22] A.A. Green, P.A. Silver, J.J. Collins, P. Yin
Toehold switches: de-novo-designed regulators of gene expression
Cell 159: 925-939 (2014). [PDF], [Supplementary Materials: S1, S2, Supplementary Tables: S1, S2, S3, S4, S5, S6, S7]

• See media coverage for [22] and [23]: Wyss News Release, BBC News, Laboratory Equipment, Nanowerk, Medical News Today, Red Orbit, CNET, TheScientist, Phys.org, IEEE Spectrum, Medical Daily, MIT Technology Review, heise online, Next Big Future, Design & Trend, Newsweek, io9, Headlines & Global News, Digital Trends, (e) Science News, R&D Magazine
• See videos:

  Programmable Paper	Toehold Switches

[21] Y. Ke^†, L.L. Ong^†, W. Sun^†, J. Song, M. Dong, W.M. Shih, P. Yin
DNA brick crystals with prescribed depths
Nature Chemistry 6:994-1002 (2014). [PDF], [Supplementary Materials: S1, S2, S3]

• See media coverage: Wyss News Release, R&D Magazine, Phys.org, gizmag, Tech Times, ZME Science, Headlines & Global News, Next Big Future

[20] Z. Jin, W. Sun, P. Yin, M. Strano
Nanolithography based on metalized DNA templates for graphene patterning
Current Protocols in Chemical Biology 6:53-64 (2014).

[19] B. Wei, L.L. Ong, J. Chen, A. Jaffe, P. Yin
Complex reconfiguration of DNA nanostructures
Angewandte Chemie 126:7605-7609 (2014). [PDF] [Supplementary Materials]

[18] R. Iinuma^†, Y. Ke^†, R. Jungmann^†, T. Schlichthaerle, J.B. Woehrstein, P. Yin
Polyhedra self-assembled from DNA tripods and characterized with 3D DNA-PAINT
Science 344:65-69 (2014). [PDF] [Supplementary Materials] [Movie 1] [Movie 2]

• See media coverage: Wyss News Release, Nanotechnology Now, Veooz, Brunch News, Science Daily, Machines Like Us, Nanowerk, Harvard Gazette, Phys.org, Biomedicine, Science Codex, The Emory Health Sciences Research Blog, Tech Times, e! Science News, Microscopy and Analysis, HNGN, USA News, Newsfiber, Fierce Drug Delivery, Nolet, w8.ns, Design News
• See an animation video:

  Spotting DNA cages with blinking DNA

[17] J. Sadowski, C.R. Calvert, D.Y. Zhang, N.A. Pierce, P. Yin
Developmental self-assembly of a DNA tetrahedron
ACS Nano DOI: 10.1021/nn4038223, PMID: 24720462 (2014). [PDF] [Supplementary Materials]

[16] J. Wu, D. Zhang, P. Yin, F. Vollmer
Ultraspecific and highly sensitive nucleic acid detection by integrating a DNA catalytic network with a label-free microcavity
Small DOI: 10.1002/smll.201303558, PMID: 24585636 (2014).[PDF] [Supplementary Materials]

[15] R. Jungmann^†, M.S. Avendano^†, J.B. Woehrstein^†, M. Dai, W.M. Shih, P. Yin
Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT
Nature Methods11(3):313-318 (2014). [PDF] [Supplementary Materials]

• See abstract and summary figure here.
• See media coverage: Wyss News Release, Harvard Gazette, Gizmodo, The Daily Mail, Wired, R&D Magazine, Phys.org, Updated News, News Medical, Nanowerk, e! Science News, Bioscience Technology, redOrbit, Softpedia, Worldess Tech, Hematology Times, Antibody Review, SOTT, Nanotech Etc., Qstorm, Biomedicine, The Engineer, Genome Web, Epoch Times, Bubblews, Scicasts, Kurzweil

[14] B. Wei, M. Dai, C. Myhrvold, Y. Ke, R. Jungmann, P. Yin
Design space for complex DNA structures
J. Am. Chem. Soc. 135 (48):18080-8 (2013). [PDF], [Supplementary Materials: S1, S2]

[13] L. Hochrein, M. Schwarzkopf, M. Shahgholi, P. Yin, N. Pierce
Conditional Dicer substrate formation via shape and sequence transduction with small conditional RNAs
J. Am. Chem. Soc. 135 (46):17322-30, (2013). [PDF], [Supplementary Materials]

[12] H. Qi, M. Ghodousi, Y. Du, C. Grun, H. Bae, P. Yin^*, A. Khademhosseini^*.
DNA-directed self-assembly of shape-controlled hydrogels
Nature Communications 4, 2275 (2013). [PDF], [Supplementary Materials]

• See abstract and summary figure here.
• See media coverage: Wyss Institute's press release, Design News, Harvard Gazette, The Harvard Crimson, Wired, Discovery News, BostonInno, Harvard Systems Biology, Mashable, Science Daily, Las Vegas Guardian Express, Popular Mechanics

[11] C. Myhrvold, M. Dai, P.A. Silver, P. Yin.
Isothermal self-assembly of complex DNA structures under diverse and biocompatible conditions
Nano Letters 13(9): 4242-8 (2013). [PDF], [Supplementary Materials: S1, S2]

• See abstract and summary figure here.

[10] T.E. Schaus, P. Yin.
Molecular computing: In situ computation of cell identity (News and Views)
Nature Nanotechnolgy 155, 546-8 (2013). [PDF]

[9] S. Surwade, F. Zhou, B. Wei, W. Sun, A. Powell, C. O'Donnell, P. Yin^*, H. Liu^*
Nanoscale growth and patterning of inorganic oxides using DNA nanostructure templates
J. Am. Chem. Soc. 135, 6778-6781 (2013). [PDF] [Supporting Material]

• See abstract and summary figure here.

[8] Z. Jin, W. Sun, Y. Ke, C.-J. Shih, G. L.C. Paulus, Q. H. Wang, B. Mu, P. Yin^*, M. S. Strano^*
Metalized DNA nanolithography for encoding and transferring spatial information for graphene patterning
Nature Communications 4, 1663 (2013). [PDF] [Supporting Material]

• See abstract and summary figure here.
• See media coverage: MIT new release, SciTech Daily, Electronic News, ExtremeTech, Paste Magazine, Physics Buzz, The Verge, Digital Manufacturing Report

[7] D. Woods, H.L. Chen, S. Goodfriend, N. Dabby, E. Winfree, P. Yin
Active self-assembly of algorithmic shapes and patterns in polylogarithmic time
Proceedings of the 4th conference on Innovations in Theoretical Computer Science (ITCS) 353-354 (2013). [PDF]. Full article preprint on arXiv arXiv:1301.2626v1. [PDF]

• See abstract and summary figure here.

[6] Y. Ke, L. Ong, W. Shih, P. Yin
Three-dimensional structures self-assembled from DNA bricks
Science 338, 1177-1183 (2012). [PDF] [Supporting Material]

• See abstract and summary figure here.
• See perpective article by K. Gothelf: "LEGO-like DNA structures".
• See media coverage: Wyss Institute's press release, Harvard Gazette, NBC News Video, NBC News, LA Times, Boston.com, Discover Magazine, Discovery News, CBS42.com, The Scientist, Space.com, BioTechniques, Bio-Medicine, Genetic Engineering & Biotechnology News, Popular Mechanics, R&D Magazine, Chemistry World, Phys.org, TechNewsDaily, Science Daily, Extreme Tech, e! Science News, Science Codex, Lab Spaces, Genome Web, IvanHoe.com, Lukor.com, Terra Brasil, French Tribune, Spanish Scientific News Agency, Medindia, Wissenslogs, stdaily.com
• See photo slideshow here.
• See animation videos:

  Building 3D Structures with DNA Bricks	DNA Bricks -- Molecular Animation

[5] C. Lin, R. Jungmann, A.M. Leifer, C. Li, D. Levner, G.M. Church, W. Shih^*, P. Yin^*
Sub-micrometer geometrically encoded fluorescent barcodes self-assembled from DNA
Nature Chemistry 4, 832-839 (2012). [PDF] [Supporting Material]

• See abstract and summary figure here.
• See media coverage: Wyss Institute's press release, Harvard Crimson, NSF, Phys.org, R & D magazine, Materials Today, BioOpticsWorld, DarkDaily, TechNewsDaily, Laboratory Talk

[4] B. Wei, M. Dai and P. Yin
Complex shapes self-assembled from single-stranded DNA tiles
Nature 485, 623-626 (2012). [PDF] [Supporting material: S1-5, S6, S7, S8]

• See abstract and summary figure here.
• See News and Views by P. Rothemund and E.S. Anderson: "The importance of being modular".
• See media coverage: Wyss Institute's press release, Nature, Discover Magazine, Harvard Gazette, MSNBC, Los Angeles Times, Daily Mail (UK), MSN, NewScientist, BioTechniques, Foresight Institute, The China Post, Science Illustrated, PCWorld, Gizmodo, Azonano, Radio Australia News, iOL Scitech, World News Australia, Asian Age, Physics World, Phys.org, R & D Magazine, Arabs Today, Fast Code Design
• See an animation video:

  Making Structures with DNA "Building Blocks"

[3] D.Y. Zhang, S.X. Chen, and P. Yin
Optimizing the specificity of nucleic acid hybridization
Nature Chemistry 4, 208-14 (2012). [PDF] [Supporting material]

• See abstract and summary figure here.
  
• See News and Views by G. Altan-Bonnet and F.R. Kramer: "Robust sequence discrimination".
• See Wyss Institute's news story

[2] P. Yin, R.F. Hariadi, S. Sahu, H.M.T. Choi, S.H. Park, T.H. LaBean, J.H. Reif
Programming DNA tube circumferences
Science 321, 824-826 (2008). [PDF] [Supporting material]

• See abstract and summary figure here.
  
• Highlighted in Nature Nanotechnology
  
• See Caltech's news release

[1] P. Yin, H.M.T. Choi, C.R. Calvert, N.A. Pierce
Programming biomolecular self-assembly pathways
Nature 451, 318-322 (2008). [PDF] [Supporting material]

• See abstract and summary figure here.
  
• Highlighted in "The year in Nature", which features Nature manuscript editors' 22 favorites in 2008
  
• See Caltech's news release and NSF's news release
  
• See commentaries: "Biomolecular assembly: Dynamic DNA" by W. Shih in Nature Materials, "Rational engineering of dynamic DNA systems" by U. Feldkamp and C.M. Niemeyer in Angew Chemie, and "Tying new knots in synthetic biology" by D.K. Karig and M.L. Simpson in HFSP Journal